Slims arindam presentaion
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Transcript of Slims arindam presentaion
Copyright 2011 Digital Enterprise Research Institute. All rights reserved.
Digital Enterprise Research Institute www.deri.ie
Enabling Networked Knowledge
A Semantic Laboratory Information Management
System for Stem Cell ResearchArindam Halder
P.I. : Helena F Deus, Frank Barry
Digital Enterprise Research Institute www.deri.ie
Enabling Networked Knowledge
Why Stem cells??
Digital Enterprise Research Institute www.deri.ie
Enabling Networked Knowledge
The problems for stem cell researcher
Digital Enterprise Research Institute www.deri.ie
Enabling Networked Knowledge
Motivation
Long ,complex and expensive experiments
High failure rates
Absence of effective data sharing
Lack of credible in-silico modeling and simulation tools.
Digital Enterprise Research Institute www.deri.ie
Enabling Networked Knowledge
Research Hypothesis
To unify public stem cell resources To create a plug and play architecture for
data access To enable decision support system. To enable agent oriented stem cell
modeling and simulations.
Digital Enterprise Research Institute www.deri.ie
Enabling Networked Knowledge
Challenges
Data Incoherence Data deluge Complexity of networks Lack of ‘intelligent’ models Overlapping phenomena
representing different processes
To build an agent-based stem cell model
Digital Enterprise Research Institute www.deri.ie
Enabling Networked Knowledge
Architecture
+Mechanical stimulus 1
SPARQL Query
Mediated Ontology+ D2RQ Engine
Rule based Multi agent Modelling and simulation
Digital Enterprise Research Institute www.deri.ie
Enabling Networked Knowledge
Current Status
Automation of database mapping and ontology creation Mapping STRING database using D2RQ Concept matching between DB and existing appropriate
ontologies.
Digital Enterprise Research Institute www.deri.ie
Enabling Networked Knowledge
Thank You!!!!